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We are pleased to present to the entire academic community and the general public the following work, which contains recent research results of a group of teachers from the Faculty of Educational Sciences in areas such a...

Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and multi-task architecture brings new possib...

The cBioPortal for Cancer Genomics (http://cbioportal.org) provides a Web resource for exploring, visualizing, and analyzing multidimensional cancer genomics data. The portal reduces molecular profiling data from cancer ...

We propose a technique for producing `visual explanations' for decisions from a large class of Convolutional Neural Network (CNN)-based models, making them more transparent. Our approach - Gradient-weighted Class Activat...

The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of hypotheses. However, it is well known that more complex evolut...

BACKGROUND: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method for describing the correlation patterns a...

Although microRNAs (miRNAs), other non-coding RNAs (ncRNAs) (e.g. lncRNAs, pseudogenes and circRNAs) and competing endogenous RNAs (ceRNAs) have been implicated in cell-fate determination and in various human diseases, s...

The ARB (from Latin arbor, tree) project was initiated almost 10 years ago. The ARB program package comprises a variety of directly interacting software tools for sequence database maintenance and analysis which are cont...

Abstract This article describes the latest development of a generic approach to detecting and visualizing emerging trends and transient patterns in scientific literature. The work makes substantial theoretical and method...

Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential expression testing, and sim...

The Reactome Knowledgebase (www.reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism and other cellular processes as an ordered network of molecular transformations-an e...

1 Introduction 1.1 What is Data Mining? 1.2 Motivating Challenges 1.3 The Origins of Data Mining 1.4 Data Mining Tasks 1.5 Scope and Organization of the Book 1.6 Bibliographic Notes 1.7 Exercises 2 Data 2.1 Types of Data...

Subjects / keywords: graph algorithms, algorithm engineering, graph drawing, network visualization, computational geometry; Science: Mathematics

Subjects / keywords: Closed captioning; Computer science; Discriminative model; Artificial intelligence; Convolutional neural network; Generalization; Context (archaeology); Class (philosophy); Pattern recognition (psychology); Image (mathem...

Subjects / keywords: Softmax function; Computer science; Benchmark (surveying); Classifier (UML); Artificial intelligence; Convolutional neural network; Machine learning; Visualization; Pattern recognition (psychology); Geodesy; Geography

A visual attention system, inspired by the behavior and the neuronal architecture of the early primate visual system, is presented. Multiscale image features are combined into a single topographical saliency map. A dynam...

Summary Haplotype networks are an intuitive method for visualising relationships between individual genotypes at the population level. Here, we present popart , an integrated software package that provides a comprehensiv...

Subjects / keywords: Computer science; Visualization; Workstation; Software; Context (archaeology); Interface (matter); Rapid prototyping; Segmentation; Focus (optics); Medical imaging; Graphical user interface; Human–computer interaction