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This is the second half of a two part series devoted to the tabu search metastrategy for optimization problems. Part I introduced the fundamental ideas of tabu search as an approach for guiding other heuristics to overco...

Many optimization problems in various fields have been solved using diverse optimization al gorithms. Traditional optimization techniques such as linear programming (LP), non-linear programming (NLP), and dynamic program...

An analogy with the way ant colonies function has suggested the definition of a new computational paradigm, which we call ant system (AS). We propose it as a viable new approach to stochastic combinatorial optimization. ...

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. Previously, HMMER has mainly been available only as a computationally intensive UNIX command-line tool, restricting its use....

This article describes the software suite GROMACS (Groningen MAchine for Chemical Simulation) that was developed at the University of Groningen, The Netherlands, in the early 1990s. The software, written in ANSI C, origi...

Potential conflict of interest: Dr. Chalasani consults for and received grants from Eli Lilly. He consults for NuSirt, AbbVie, Afimmune, Tobira, Madrigal, Shire, Cempra, Ardelyx, Axovant, and Amarin. He received grants f...