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The paper deals with the use of open source software in education. Open source software is used more and more all over the world. Linux, Mozilla, MySQL, OpenOffice.org etc. are very well-known packages. A lot of open so...

Gephi is an open source software for graph and network analysis. It uses a 3D render engine to display large networks in real-time and to speed up the exploration. A flexible and multi-task architecture brings new possib...

QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensi...

This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete...

QUANTUM ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density-functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, a...

The newly developed GSAS-II software is a general purpose package for data reduction, structure solution and structure refinement that can be used with both single-crystal and powder diffraction data from both neutron an...

mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package...

El desarrollo de motores de búsqueda ha crecido en los últimos años gracias al uso de herramientas y frameworks open source, pues facilitan una base sobre la cual realizar nuestras aplicaciones orientadas a la extracc...

La presente obra busca introducir al lector en una línea de desarrollo de diseño de un producto en el que puede trabajar con técnicas de ingeniería inversa (escaneado 3D),manipulación del resultado del escaneo (nube...

La presente obra busca introducir al lector en una línea de desarrollo de diseño de un producto en el que puede trabajar con técnicas de ingeniería inversa (escaneo 3D),limpieza, alienado de los resultados del escane...

Java es uno de los lenguajes de programación más utilizados a nivel empresarial a la hora de desarrollar aplicaciones de gestión con buenos niveles de escalabilidad y disponibilidad. Además de tener sólidos conocimi...

Java es uno de los lenguajes de programación más utilizados a nivel empresarial a la hora de desarrollar aplicaciones de gestión con buenos niveles de escalabilidad y disponibilidad. Además de tener sólidos conocimi...

Free and Open Source Software (FOSS) is becoming more popular. Nevertheless most CIOs wouldn’t even consider this option for their enterprise information technology needs. We found that the three main concerns about F...

"In neuroscience, the P300 wave is a positive deflection in the human event-related potential. It is considered to be an endogenous potential, as its occurrence links not to the physical attributes of a stimulus, but to ...

This document shows the achieved results in the installation and testing of thin clients' networks (TCN), arranged with obsolete computers. This research topic arises from previous investigations and it is framed in a wi...

UNLABELLED: Unsupervised class discovery is a highly useful technique in cancer research, where intrinsic groups sharing biological characteristics may exist but are unknown. The consensus clustering (CC) method provides...

The lion's share of bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced using existing technologies. A major goal of single-cell genomics is to complement gene-centric metagen...

MOTIVATION: Accurate alignment of high-throughput RNA-seq data is a challenging and yet unsolved problem because of the non-contiguous transcript structure, relatively short read lengths and constantly increasing through...

In this article we present the Video Analysis Platform (VAP) which is an open source software framework for video analysis, processing and description. The main goals of VAP are: to provide a multiplatform system which a...

BACKGROUND: Gene set enrichment (GSE) analysis is a popular framework for condensing information from gene expression profiles into a pathway or signature summary. The strengths of this approach over single gene analysis...

Advances in modern sequencing technologies allow us to generate sufficient data to analyze hundreds of bacterial genomes from a single machine in a single day. This potential for sequencing massive numbers of genomes cal...

BACKGROUND: A frequent problem in computational modeling is the interconversion of chemical structures between different formats. While standard interchange formats exist (for example, Chemical Markup Language) and de fa...

MOTIVATION: Molecular simulation has historically been a low-throughput technique, but faster computers and increasing amounts of genomic and structural data are changing this by enabling large-scale automated simulation...

The newest version of MUMmer easily handles comparisons of large eukaryotic genomes at varying evolutionary distances, as demonstrated by applications to multiple genomes. Two new graphical viewing tools provide alternat...