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Cutadapt removes adapter sequences from high-throughput sequencing reads

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011

When small RNA is sequenced on current sequencing machines, the resulting reads are usually longer than the RNA and therefore contain parts of the 3' adapter. That adapter must be found and removed error-tolerantly from ...

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fastp: an ultra-fast all-in-one FASTQ preprocessor

Article

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen; Yanqing Zhou; Yaru Chen; Jia Gu · Bioinformatics · 2018

Motivation: Quality control and preprocessing of FASTQ files are essential to providing clean data for downstream analysis. Traditionally, a different tool is used for each operation, such as quality control, adapter tri...

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