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The Sequence of the Human Genome
Article
Article
J. Craig Venter; Mark D. Adams; Eugene W. Myers; Peter W. Li; Richard Mural; Granger G. Sutton; Hamilton O. Smith; Mark Yandell · Science · 2001
A 2.91-billion base pair (bp) consensus sequence of the euchromatic portion of the human genome was generated by the whole-genome shotgun sequencing method. The 14.8-billion bp DNA sequence was generated over 9 months fr...
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Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
Article
Article
Kenneth J. Livak; Thomas D. Schmittgen · Methods · 2001
Subjects / keywords: Real-time polymerase chain reaction; Quantitative analysis (chemistry); Delta; Computational biology; Sample (material); Biology; Biological system; Computer science; Molecular biology; Gene; Chromatography; Chemistry
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Significance analysis of microarrays applied to the ionizing radiation response
Article
Article
Virginia Goss Tusher; Robert Tibshirani; Gilbert Chu · Proceedings of the National Academy of Sciences · 2001
Microarrays can measure the expression of thousands of genes to identify changes in expression between different biological states. Methods are needed to determine the significance of these changes while accounting for t...
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A new mathematical model for relative quantification in real-time RT-PCR
Article
Article
Michael W. Pfaffl · Nucleic Acids Research · 2001
Use of the real-time polymerase chain reaction (PCR) to amplify cDNA products reverse transcribed from mRNA is on the way to becoming a routine tool in molecular biology to study low abundance gene expression. Real-time ...
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Initial sequencing and analysis of the human genome
Article
Article
Eric S. Lander; Lauren Linton; Bruce W. Birren; Chad Nusbaum; Michael C. Zody; Jennifer Baldwin; Keri Devon; Ken Dewar · Nature · 2001
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available ...
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MEGA2: molecular evolutionary genetics analysis software
Article
Article
Sudhir Kumar; Koichiro Tamura; Ingrid B. Jakobsen; Masatoshi Nei · Bioinformatics · 2001
UNLABELLED: We have developed a new software package, Molecular Evolutionary Genetics Analysis version 2 (MEGA2), for exploring and analyzing aligned DNA or protein sequences from an evolutionary perspective. MEGA2 vastl...
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Chemistry with ADF
Article
Article
G. te Velde; F. Matthias Bickelhaupt; Evert Jan Baerends; Célia Fonseca Guerra; S. J. A. van Gisbergen; J. G. Snijders; Tom Ziegler · Journal of Computational Chemistry · 2001
Abstract We present the theoretical and technical foundations of the Amsterdam Density Functional (ADF) program with a survey of the characteristics of the code (numerical integration, density fitting for the Coulomb pot...
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