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Defeasible Logic Programming (DeLP) is a suitable tool for knowledge representation and reasoning. Its operational semantics is based on a dialectical analysis where arguments for and against a literal interact in order ...

The Numeric Taxonomy aims to group operational taxonomic units in clusters (OTUs or taxons or taxa), using the denominated structure analysis by means of numeric methods. These clusters that constitute families are the p...

In this work we analyze existing complexity results in the area of non-monotonic reasoning in general and argumentation in particular. Even though the area of argumentation is based on solid theoretical foundations, its ...

HEALPix -- the Hierarchical Equal Area iso-Latitude Pixelization -- is a versatile data structure with an associated library of computational algorithms and visualization software that supports fast scientific applicatio...

A software package for the analysis of X-ray absorption spectroscopy (XAS) data is presented. This package is based on the IFEFFIT library of numerical and XAS algorithms and is written in the Perl programming language u...

Although genomewide RNA expression analysis has become a routine tool in biomedical research, extracting biological insight from such information remains a major challenge. Here, we describe a powerful analytical method ...

Protein identification and analysis software performs a central role in the investigation of proteins from two-dimensional (2-D) gels and mass spectrometry. For protein identification, the user matches certain empiricall...

Subjects / keywords: Electron paramagnetic resonance; MATLAB; Computation; Software; Software package; Computational science; Toolbox; Spins; Computer science; Scope (computer science); Spin (aerodynamics); Computational physics

The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of hypotheses. However, it is well known that more complex evolut...

This article describes the software suite GROMACS (Groningen MAchine for Chemical Simulation) that was developed at the University of Groningen, The Netherlands, in the early 1990s. The software, written in ANSI C, origi...

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on lo...