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Comparative Genome Analysis and Evaluation of Probiotic Characteristics of Lactobacillus plantarum Strain JDFM LP11
Article
Article
Jaeyoung Heo et al · Springer Nature · 2018 · ISSN 2636-0772
Abstract In the current study, the probiotic potential of approximately 250 strains of lactic acid bacteria (LAB) isolated from piglet fecal samples were investigated; among them Lactobacillus plantarum strain JDFM LP11,...
LCC TENDOkZvb2QgcHJvY2Vzc2luZyBhbmQgbWFudWZhY3R1cmU~; LCC:Animal cultureIdioma English
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Open Access
High magnitude of carbapenemase-producing Acinetobacter baumannii in sepsis patients at Ethiopian referral hospitals: a whole genome analysis
Article
Article
Melese Hailu Legese et al · Nature Portfolio · 2026 · ISSN 2045-2322
Abstract Carbapenemase-producing Acinetobacter baumannii (CP-Ab) is a critical priority pathogen. Between October 2019 and September 2020, a multicentre study was conducted at four Ethiopian hospitals: Tikur Anbessa and ...
LCC LCC:Medicine; TENDOlNjaWVuY2U~Idioma English
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Open Access
Unraveling the genome of Bacillus velezensis MEP218, a strain producing fengycin homologs with broad antibacterial activity: comprehensive comparative genome analysis
Article
Article
Medeot, Daniela Beatriz et al · Nature Research · 2023 · ISSN 2045-2322
Bacillus sp. MEP218, a soil bacterium with high potential as a source of bioactive molecules, produces mostly C16–C17 fengycin and other cyclic lipopeptides (CLP) when growing under previously optimized culture conditi...
Idioma English
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Open Access
Exploring the biotechnological potential of Amazonian microorganisms through in silico genome analysis for detection of biosynthetic gene clusters
Article
Article
Eric de Lima Silva MARQUES et al · Instituto Nacional de Pesquisas da Amazônia · 2026 · ISSN 0044-5967
ABSTRACT The discovery of novel bioactive compounds has significant implications for diverse biotechnological applications. However, microbial genomes remain largely underexplored regarding their potential to produce sec...
LCC LCC:Science (General)Idioma English
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Open Access
From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
Article
Article
Géraldine Van der Auwera; Mauricio O. Carneiro; Christopher Hartl; Ryan Poplin; Guillermo del Angel; Ami Levy‐Moonshine; Tadeusz Jordan; Khalid Shakir · Current Protocols in Bioinformatics · 2013
Abstract This unit describes how to use BWA and the Genome Analysis Toolkit (GATK) to map genome sequencing data to a reference and produce high‐quality variant calls that can be used in downstream analyses. The comple...
Idioma English
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Roary: rapid large-scale prokaryote pan genome analysis
Article
Article
Andrew J. Page; Carla Cummins; Martin Hunt; Vanessa Wong; Sandra Reuter; Matthew T. G. Holden; María Fookes; Daniel Falush · Bioinformatics · 2015
UNLABELLED: A typical prokaryote population sequencing study can now consist of hundreds or thousands of isolates. Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic geno...
Idioma English
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Genome sequence analysis of Pseudomonas extremaustralis provides new insights into environmental adaptability and extreme conditions resistance
Article
Article
Raiger Iustman, Laura Judith et al · Springer Tokyo · 2015 · ISSN 1431-0651
The genome of the Antarctic bacterium Pseudomonas extremaustralis was analyzed searching for genes involved in environmental adaptability focusing on anaerobic metabolism, osmoregulation, cold adaptation, exopolysacchari...
Idioma English
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Open Access
Genome-wide analysis of DNA methylation in human amnion
Article
Article
Kim, Jinsil et al · HINDAWI publishing Corporation · 2013 · ISSN 1537-744X
The amnion is a specialized tissue in contact with the amniotic fluid, which is in a constantly changing state. To investigate the importance of epigenetic events in this tissue in the physiology and pathophysiology of p...
Idioma English
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Open Access
Genome-wide identification and gene expression analysis of AhNHXs in peanut
Article
Article
Yishuang Zhou et al · BMC · 2026 · ISSN 1471-2229
Abstract Background The Na⁺/H⁺ antiporter (NHX) family plays a crucial role in regulating intracellular Na and H homeostasis in plants. This study conducted a genome-wide analysis and expression assessment of peanut ...
LCC TENDOkJvdGFueQ~~Idioma English
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Open Access
Genome-wide identification of the CmHDZ gene family in Chinese chestnut (Castanea mollissima) and analysis of their expression patterns under different types of abiotic stress
Article
Article
Xiurong Xu et al · Frontiers Media S.A · 2026 · ISSN 1664-462X
The members of the homologous homeodomain-leucine zipper (HDZ) family of transcription factors play important roles in the ability of plants to cope with adverse conditions. In this study, we analyzed the genome of the C...
LCC TENDOlBsYW50IGN1bHR1cmU~Idioma English
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Open Access
Genome-wide identification of the UMAMIT gene family in Medicago sativa L. and analysis of the response of umamits mutant to abiotic stress
Article
Article
Hongbo Dai et al · BMC · 2026 · ISSN 1471-2229
Abstract Background Usually Multiple Amino acids Move In and Out Transporters (UMAMITs), belonging to the MtN21/EamA-like/UMAMIT superfamily, play vital roles in amino acid transport, nodule formation, and nitrogen fixat...
LCC TENDOkJvdGFueQ~~Idioma English
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Open Access
Genome‐Wide Identification of MYB Genes and Analysis of Their Expression Under Cold Stress Conditions in Artocarpus heterophyllus
Article
Article
Xiangwei Ma et al · Wiley · 2026 · ISSN 2475-4455
ABSTRACT Jackfruit (Artocarpus heterophyllus) thrives in subtropical and tropical areas but is vulnerable to winter cold stress. The myeloblastosis (MYB) transcription factor family plays an important role in plant biolo...
LCC TENDOkJvdGFueQ~~Idioma English
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Open Access
Whole-genome sequence analysis of the naturally competent Acinetobacter baumannii clinical isolate A118
Article
Article
Traglia, German Matias et al · Oxford University Press · 2014 · ISSN 2235-2239
Recent studies have demonstrated a high genomic plasticity in Acinetobacter baumannii, which may explain its high capacity to acquire multiple antibiotic resistance determinants and to survive in the hospital environment...
Idioma English
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Open Access
Genetic diagnosis in fetal hydronephrosis: assessment using chromosomal microarray analysis and whole-genome sequencing
Article
Article
Jing Wang et al · BMC · 2026 · ISSN 1479-7364
Abstract Background Antenatal hydronephrosis (AHN) is a common urological abnormality identified during prenatal ultrasound examination, with heterogeneous underlying causes. This study aimed to investigate the genetic e...
LCC LCC:Medicine; LCC:GeneticsIdioma English
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Open Access
Whole genome resequencing analysis of tobacco K326 and its cold sensitive mutant M18
Article
Article
Hui Yin et al · Frontiers Media S.A · 2026 · ISSN 1664-462X
IntroductionLow temperatures cause flower prematurely of tobacco sensitive variety, severely impacting its yield and quality. MethodsTo uncover the molecular mechanisms underlying cold-induced early flowering in tobacco,...
LCC TENDOlBsYW50IGN1bHR1cmU~Idioma English
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Open Access
Comparative analysis of mitochondrial genomes in the Ceratocystidaceae reveals highly conserved gene organization despite substantial genome size variation
Article
Article
Anien Viljoen et al · BMC · 2026 · ISSN 1471-2164
Abstract Background Comparative studies of mitochondrial genomes can assist in determining evolutionary and phylogenetic relationships. In the Ceratocystidaceae fungal family, mitochondrial genomes from only two genera a...
LCC TENDOkJpb3RlY2hub2xvZ3k~; LCC:GeneticsIdioma English
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Open Access
Meta-analysis of genome-wide association from genomic prediction models
Article
Article
Bernal Rubio, Yeni Liliana et al · Wiley · 2015 · ISSN 0268-9146
Genome-wide association (GWA) studies based on GBLUP models are a common practice in animal breeding. However, effect sizes of GWA tests are small, requiring larger sample sizes to enhance power of detection of rare vari...
Idioma English
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Open Access
Traceability analysis of a Staphylococcus aureus food poisoning incident based on whole-genome sequencing
Article
Article
GUAN Peijun et al · The Editorial Office of Chinese Journal of Food Hygiene · 2025 · ISSN 1004-8456
ObjectiveTo perform molecular typing and traceability analysis on samples from a food poisoning incident caused by Staphylococcus aureus at a school in Boluo County, Huizhou City, and to provide guidance for future m...
LCC TENDOkZvb2QgcHJvY2Vzc2luZyBhbmQgbWFudWZhY3R1cmU~; LCC:Nutrition. Foods and food supplyIdioma zho
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Open Access
Whole genome sequencing based characteristics and transmission risk analysis of Shiga toxin producing Escherichia coli from goats, breeding environment and raw mutton in Zigong, Sichuan
Article
Article
ZHANG Ling et al · The Editorial Office of Chinese Journal of Food Hygiene · 2025 · ISSN 1004-8456
LCC TENDOkZvb2QgcHJvY2Vzc2luZyBhbmQgbWFudWZhY3R1cmU~; LCC:Nutrition. Foods and food supplyIdioma zho
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Open Access
Whole-genome SNP analysis for typing the pandemic pathogen Fusarium graminearum sensu stricto
Article
Article
Kulik, Tomasz et al · Frontiers Media S.A · 2022 · ISSN 1664-302X
Recent improvements in microbiology and molecular epidemiology were largely stimulated by whole- genome sequencing (WGS), which provides an unprecedented resolution in discriminating highly related genetic backgrounds. W...
Idioma English
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Open Access
Genetic diversity and antimicrobial resistance analysis of Salmonella enterica serovar enteritidis based on whole genome sequencing
Article
Article
ZHANG Lin et al · The Editorial Office of Chinese Journal of Food Hygiene · 2025 · ISSN 1004-8456
ObjectiveTo understand the genetic diversity and antimicrobial resistance characteristics of Salmonella enterica serovar enteritidis (SE) isolated from foodborne disease surveillance in Sichuan Province from 2020 to ...
LCC TENDOkZvb2QgcHJvY2Vzc2luZyBhbmQgbWFudWZhY3R1cmU~; LCC:Nutrition. Foods and food supplyIdioma zho
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Open Access
Egyptian river buffalo (Bubalus bubalis) mitogenome sequence: characterization and analysis of variations in protein- and transfer RNA-coding genes
Article
Article
Amal A. M. Hassan et al · SpringerOpen · 2026 · ISSN 2090-990X
Abstract Background Genetic analysis of the mitochondrial genome (mitogenome) has become essential for breed characterization, population genetics, and taxonomic studies in livestock. Genetic variations in mitochondrial ...
LCC TENDOlpvb2xvZ3k~Idioma English
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Open Access
Use of genome‐wide DNA methylation analysis to identify prognostic CpG site markers associated with longer survival time in dogs with multicentric high‐grade B‐cell lymphoma
Article
Article
Yong Bin Teoh et al · Oxford University Press · 2024 · ISSN 0891-6640
Abstract Background DNA methylation analysis might identify prognostic CpG sites in CHOP‐treated dogs with multicentric high‐grade B‐cell lymphoma (MHGL) with heterogenous prognosis. Objective To identify prognosti...
LCC TENDOlZldGVyaW5hcnkgbWVkaWNpbmU~Idioma English
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Open Access
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Article
Article
Arabidopsis Genome Initiative · Nature · 2000
Subjects / keywords: Arabidopsis; Genome; Biology; Gene; Genetics; Arabidopsis thaliana; Multicellular organism; Gene family; Caenorhabditis elegans; Gene duplication; Computational biology; Mutant
Idioma English
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