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A DNA sequence analysis parallelization in large databases using cluster, multi-cluster, and GRID is presented. Achievable speedup, scalability, and overhead introduced by communications are discussed, and the impact of ...

Molecular simulation is an extremely useful, but computationally very expensive tool for studies of chemical and biomolecular systems. Here, we present a new implementation of our molecular simulation toolkit GROMACS whi...

Parallel divide and conquer computations, encompassing a wide variety of applications, can be modeled and encapsulated as a high level primitive called skeleton. The paper deals with a skeleton designed for parallel div...

Efficient methods for processing genomic data were developed to increase reliability of estimated breeding values and to estimate thousands of marker effects simultaneously. Algorithms were derived and computer programs ...

NetworkX is a Python language package for exploration and analysis of networks and network algorithms. The core package provides data structures for representing many types of networks, or graphs, including simple graphs...

La búsqueda por similitud consiste en recuperar todos aquellos objetos dentro de una base de datos que sean parecidos o relevantes a una determinada consulta. Este concepto tiene una amplia gama de aplicaciones en área...

InfiniBand (IBA) technology was developed to address the performance issues associated with messages movement among Endnodes and computer I/O devices. However, InfiniBand is also widely deployed within high performance c...