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SUMMARY: CD-HIT is a widely used program for clustering biological sequences to reduce sequence redundancy and improve the performance of other sequence analyses. In response to the rapid increase in the amount of sequen...

MOTIVATION: Accurate alignment of high-throughput RNA-seq data is a challenging and yet unsolved problem because of the non-contiguous transcript structure, relatively short read lengths and constantly increasing through...

Scientific collaboration are becoming interdisciplinary, and scientists are working in informal collaboration to solve complex problems that require multiple types of large resources. An option is a computational grid. A...

This thesis observes the emerging trend of convergence of control with computing and communication. By exploiting control and scheduling codesign, we study some practical and open problems in RTCSs from a unique viewpoin...

Understanding the evolutionary history of living organisms is a central problem in biology. Until recently the ability to infer evolutionary relationships was limited by the amount of DNA sequence data available, but new...

Recommender systems apply knowledge discovery techniques to the problem of making personalized recommendations for information, products or services during a liveinteraction. These systems, especially the k-nearest neigh...