ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Artículo

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Gabriela Bindea; Bernhard Mlecnik; Hubert Hackl; Pornpimol Charoentong; Marie Tosolini; Amos Kirilovsky; Wolf H. Fridman; Franck Pagès · Bioinformatics · 2009

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Autore / responsabile

Gabriela Bindea; Bernhard Mlecnik; Hubert Hackl; Pornpimol Charoentong; Marie Tosolini; Amos Kirilovsky; Wolf H. Fridman; Franck Pagès

Editore

Bioinformatics

Anno

2009

Lingua

Inglés

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Abstract Summary: We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally organized GO/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in. Availability: http://www.ici.upmc.fr/cluego/cluegoDownload.shtml Contact: jerome.galon@crc.jussieu.fr Supplementary information: Supplementary data are available at Bioinformatics online.

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APA 7

Bindea, G, Mlecnik, B, Hackl, H, Charoentong, P, Tosolini, M, Kirilovsky, A, Fridman, W. H, & Pagès, F. (2009). ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. https://doi.org/10.1093/bioinformatics/btp101

MLA

Bindea, Gabriela, et al. "ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks." 2009. https://doi.org/10.1093/bioinformatics/btp101.

Chicago

Bindea, Gabriela, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf H. Fridman, and Franck Pagès. 2009. "ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.". https://doi.org/10.1093/bioinformatics/btp101.

Harvard

Bindea, G. et al. 2009, ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks, Bioinformatics, available at: https://doi.org/10.1093/bioinformatics/btp101 [Accessed 8 Aug. 2026].

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Titolo: ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Autore / collaboratori: Gabriela Bindea; Bernhard Mlecnik; Hubert Hackl; Pornpimol Charoentong; Marie Tosolini; Amos Kirilovsky; Wolf H. Fridman; Franck Pagès

Editore: Bioinformatics

Anno di pubblicazione: 2009

Lingua: Inglés

Soggetti

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DECIPHER; KEGG; Plug-in; Annotation; Computer science; Gene ontology; Ontology; Gene Annotation; Representation (politics); Computational biology; Information retrieval; Bioinformatics