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Covidex: an ultrafast and accurate tool for virus subtyping

Cacciabue, Marco Polo Domingo et al · Cold Spring Harbor Laboratory Press · 2020

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Author / responsible party
Cacciabue, Marco Polo Domingo et al
Publisher
Cold Spring Harbor Laboratory Press
Year
2020
ISSN
2692-8205
ISSN
2692-8205
Language
English

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Covidex is an open-source, alignment-free machine learning subtyping tool for viral species. It is a shiny app that allows a fast and accurate classification in pre-defined clusters for SARS-CoV-2 and FMDV genome sequences. The user can also build its own classification models with the Covidex model generator. Fil: Cacciabue, Marco Polo Domingo. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación En Ciencias Veterinarias y Agronómicas. Instituto de Agrobiotecnología y Biología Molecular. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Agrobiotecnología y Biología Molecular; Argentina. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina Fil: Aguilera, Pablo Nicolas. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación En Ciencias Veterinarias y Agronómicas. Instituto de Agrobiotecnología y Biología Molecular. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Agrobiotecnología y Biología Molecular; Argentina. Universidad Nacional de Luján. Departamento de Ciencias Básicas; Argentina

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APA 7

Cacciabue, M. P. D. E. A. (2020). Covidex: an ultrafast and accurate tool for virus subtyping. http://hdl.handle.net/11336/129481

MLA

Cacciabue, Marco Polo Domingo et al. "Covidex: an ultrafast and accurate tool for virus subtyping." 2020. http://hdl.handle.net/11336/129481.

Chicago

Cacciabue, Marco Polo Domingo et al. 2020. "Covidex: an ultrafast and accurate tool for virus subtyping.". http://hdl.handle.net/11336/129481.

Harvard

Cacciabue, M. P. D. E. A. 2020, Covidex: an ultrafast and accurate tool for virus subtyping, Cold Spring Harbor Laboratory Press, available at: http://hdl.handle.net/11336/129481 [Accessed 8 Aug. 2026].

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Title
Covidex: an ultrafast and accurate tool for virus subtyping
Author / contributors
Cacciabue, Marco Polo Domingo et al
Publisher
Cold Spring Harbor Laboratory Press
Publication year
2020
ISSN
2692-8205
ISSN
2692-8205
Language
English

Subjects

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SARS-CoV-2; SUBTYPING; MACHINE LEARNING; COVID-19; https://purl.org/becyt/ford/1.2; https://purl.org/becyt/ford/1; https://purl.org/becyt/ford/1.6; https://purl.org/becyt/ford/1
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