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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bùi Quang Minh; Heiko A. Schmidt; Olga Chernomor; Dominik Schrempf; Michael D. Woodhams; Arndt von Haeseler; Robert Lanfear · Molecular Biology and Evolution · 2020

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Author / responsible party
Bùi Quang Minh; Heiko A. Schmidt; Olga Chernomor; Dominik Schrempf; Michael D. Woodhams; Arndt von Haeseler; Robert Lanfear
Publisher
Molecular Biology and Evolution
Year
2020
Language
English

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IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.

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APA 7

Minh, B. Q, Schmidt, H. A, Chernomor, O, Schrempf, D, Woodhams, M. D, Haeseler, A. V, & Lanfear, R. (2020). IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. https://doi.org/10.1093/molbev/msaa015

MLA

Minh, Bùi Quang, et al. "IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era." 2020. https://doi.org/10.1093/molbev/msaa015.

Chicago

Minh, Bùi Quang, Heiko A. Schmidt, Olga Chernomor, Dominik Schrempf, Michael D. Woodhams, Arndt von Haeseler, and Robert Lanfear. 2020. "IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.". https://doi.org/10.1093/molbev/msaa015.

Harvard

Minh, B. Q. et al. 2020, IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era, Molecular Biology and Evolution, available at: https://doi.org/10.1093/molbev/msaa015 [Accessed 8 Aug. 2026].

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Title
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Author / contributors
Bùi Quang Minh; Heiko A. Schmidt; Olga Chernomor; Dominik Schrempf; Michael D. Woodhams; Arndt von Haeseler; Robert Lanfear
Publisher
Molecular Biology and Evolution
Publication year
2020
Language
English

Subjects

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Phylogenetic tree; Inference; Biology; Tree (set theory); Tree rearrangement; Software; Evolutionary biology; Computational biology; Phylogenetic network; Computer science; Machine learning; Artificial intelligence
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