News Help Institutional access
Back to results
Bibliographic record · Consultation and access
Artículo

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Todd Z. DeSantis; Philip Hugenholtz; N. Larsen; Mark Rojas; Eoin Brodie; Keith Keller; Thomas Huber; Daniel Dalevi · Applied and Environmental Microbiology · 2006

Resource page
Quick overview. Review the resource’s basic details, then access the content using the main button. This page shows only the information needed to identify, cite, and open the work.
Author / responsible party
Todd Z. DeSantis; Philip Hugenholtz; N. Larsen; Mark Rojas; Eoin Brodie; Keith Keller; Thomas Huber; Daniel Dalevi
Publisher
Applied and Environmental Microbiology
Year
2006
Language
English

Resource access

Open the content from the main option or choose another available source.

OpenAlex OpenAlex Works
Entrar por OpenAlex
Main access

Resource page

Resource reference page. Full text availability has not been automatically confirmed.
Open resource

Summary

Descripción general del contenido del recurso.

A 16S rRNA gene database (http://greengenes.lbl.gov) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent taxonomic nomenclature among curators even at the phylum level. Putative chimeras were identified in 3% of environmental sequences and in 0.2% of records derived from isolates. Environmental sequences were classified into 100 phylum-level lineages in the Archaea and Bacteria.

How to cite

Elegí el formato que necesitás y copiá la referencia al portapapeles.

APA 7

DeSantis, T. Z, Hugenholtz, P, Larsen, N, Rojas, M, Brodie, E, Keller, K, Huber, T, & Dalevi, D. (2006). Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB. https://doi.org/10.1128/aem.03006-05

MLA

DeSantis, Todd Z, et al. "Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB." 2006. https://doi.org/10.1128/aem.03006-05.

Chicago

DeSantis, Todd Z, Philip Hugenholtz, N. Larsen, Mark Rojas, Eoin Brodie, Keith Keller, Thomas Huber, and Daniel Dalevi. 2006. "Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB.". https://doi.org/10.1128/aem.03006-05.

Harvard

DeSantis, T. Z. et al. 2006, Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB, Applied and Environmental Microbiology, available at: https://doi.org/10.1128/aem.03006-05 [Accessed 8 Aug. 2026].

Share and print

Save the record, copy its permanent link, or print it as a PDF.

Export reference

You can export the record in common formats for use in a reference manager.

RIS BibTeX

Resource details

Bibliographic information to help confirm that this is the correct material.

Title
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Author / contributors
Todd Z. DeSantis; Philip Hugenholtz; N. Larsen; Mark Rojas; Eoin Brodie; Keith Keller; Thomas Huber; Daniel Dalevi
Publisher
Applied and Environmental Microbiology
Publication year
2006
Language
English

Subjects

Explore related resources through these subjects.

Phylum; 16S ribosomal RNA; Biology; Workbench; Bacterial taxonomy; Chimera (genetics); Archaea; Ribosomal RNA; Gene; Computational biology; Taxonomic rank; Genetics
Copied