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Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Andrew Waterhouse; James B Procter; David Martin; Michèle Clamp; Geoffrey J. Barton · Bioinformatics · 2009

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Author / responsible party
Andrew Waterhouse; James B Procter; David Martin; Michèle Clamp; Geoffrey J. Barton
Publisher
Bioinformatics
Year
2009
Language
English

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UNLABELLED: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. AVAILABILITY: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org.

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APA 7

Waterhouse, A, Procter, J. B, Martin, D, Clamp, M, & Barton, G. J. (2009). Jalview Version 2—a multiple sequence alignment editor and analysis workbench. https://doi.org/10.1093/bioinformatics/btp033

MLA

Waterhouse, Andrew, et al. "Jalview Version 2—a multiple sequence alignment editor and analysis workbench." 2009. https://doi.org/10.1093/bioinformatics/btp033.

Chicago

Waterhouse, Andrew, James B Procter, David Martin, Michèle Clamp, and Geoffrey J. Barton. 2009. "Jalview Version 2—a multiple sequence alignment editor and analysis workbench.". https://doi.org/10.1093/bioinformatics/btp033.

Harvard

Waterhouse, A. et al. 2009, Jalview Version 2—a multiple sequence alignment editor and analysis workbench, Bioinformatics, available at: https://doi.org/10.1093/bioinformatics/btp033 [Accessed 8 Aug. 2026].

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Title
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
Author / contributors
Andrew Waterhouse; James B Procter; David Martin; Michèle Clamp; Geoffrey J. Barton
Publisher
Bioinformatics
Publication year
2009
Language
English

Subjects

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Java applet; Workbench; Annotation; Computer science; Java; Multiple sequence alignment; Sequence alignment; Sequence (biology); World Wide Web; Visualization; Information retrieval; Programming language
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