InterProScan 5: genome-scale protein function classification

Philip Jones; David Binns; Hsin-Yu Chang; Matthew Fraser; Weizhong Li; Craig McAnulla; Hamish McWilliam; John Maslen · Bioinformatics · 2014

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Author / responsible party

Philip Jones; David Binns; Hsin-Yu Chang; Matthew Fraser; Weizhong Li; Craig McAnulla; Hamish McWilliam; John Maslen

Publisher

Bioinformatics

Year

2014

Language

English

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Abstract Motivation: Robust large-scale sequence analysis is a major challenge in modern genomic science, where biologists are frequently trying to characterize many millions of sequences. Here, we describe a new Java-based architecture for the widely used protein function prediction software package InterProScan. Developments include improvements and additions to the outputs of the software and the complete reimplementation of the software framework, resulting in a flexible and stable system that is able to use both multiprocessor machines and/or conventional clusters to achieve scalable distributed data analysis. InterProScan is freely available for download from the EMBl-EBI FTP site and the open source code is hosted at Google Code. Availability and implementation: InterProScan is distributed via FTP at ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/ and the source code is available from http://code.google.com/p/interproscan/. Contact: http://www.ebi.ac.uk/support or interhelp@ebi.ac.uk or mitchell@ebi.ac.uk

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APA 7

Jones, P, Binns, D, Chang, H. Y, Fraser, M, Li, W, McAnulla, C, McWilliam, H, & Maslen, J. (2014). InterProScan 5: genome-scale protein function classification. https://doi.org/10.1093/bioinformatics/btu031

MLA

Jones, Philip, et al. "InterProScan 5: genome-scale protein function classification." 2014. https://doi.org/10.1093/bioinformatics/btu031.

Chicago

Jones, Philip, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, and John Maslen. 2014. "InterProScan 5: genome-scale protein function classification.". https://doi.org/10.1093/bioinformatics/btu031.

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Jones, P. et al. 2014, InterProScan 5: genome-scale protein function classification, Bioinformatics, available at: https://doi.org/10.1093/bioinformatics/btu031 [Accessed 8 Aug. 2026].

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Title: InterProScan 5: genome-scale protein function classification

Author / contributors: Philip Jones; David Binns; Hsin-Yu Chang; Matthew Fraser; Weizhong Li; Craig McAnulla; Hamish McWilliam; John Maslen

Publisher: Bioinformatics

Publication year: 2014

Language: English

Subjects

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File Transfer Protocol; Unix; Computer science; Java; Operating system; Scalability; Source code; Software; Download; Code (set theory); Function (biology); Programming language