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The Open Visualization Tool (OVITO) is a new 3D visualization software designed for post-processing atomistic data obtained from molecular dynamics or Monte Carlo simulations. Unique analysis, editing and animations func...

BACKGROUND: The Avogadro project has developed an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related are...

The program Mercury , developed by the Cambridge Crystallographic Data Centre, is designed primarily as a crystal structure visualization tool. A new module of functionality has been produced, called the Materials Module...

VESTA is a three-dimensional visualization system for crystallographic studies and electronic state calculations. It has been upgraded to the latest version, VESTA 3 , implementing new features including drawing the exte...

UCSF ChimeraX is the next-generation interactive visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX brings (a) significant performance and gr...

A visual attention system, inspired by the behavior and the neuronal architecture of the early primate visual system, is presented. Multiscale image features are combined into a single topographical saliency map. A dynam...

SUMMARY: We present here Blast2GO (B2G), a research tool designed with the main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which no GO annotation is yet available. B2G joints in one app...

BACKGROUND: Functional annotation of differentially expressed genes is a necessary and critical step in the analysis of microarray data. The distributed nature of biological knowledge frequently requires researchers to n...

We propose a technique for producing `visual explanations' for decisions from a large class of Convolutional Neural Network (CNN)-based models, making them more transparent. Our approach - Gradient-weighted Class Activat...

UNLABELLED: Research over the last few years has revealed significant haplotype structure in the human genome. The characterization of these patterns, particularly in the context of medical genetic association studies, i...

Data visualization is an essential component of genomic data analysis. However, the size and diversity of the data sets produced by today's sequencing and array-based profiling methods present major challenges to visuali...

The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provid...

Materias / palabras clave: Computer science; Visualization; Functional magnetic resonance imaging; Software; Workstation; Magnetic resonance imaging; Transformation (genetics); Overlay; Artificial intelligence; Computer vision; Unix; Pattern recog...

Materias / palabras clave: Benchmark (surveying); Artificial intelligence; Computer science; Categorical variable; Cognitive neuroscience of visual object recognition; Scale (ratio); Object (grammar); Object detection; Field (mathematics); Pattern...

This article describes several features in the MAFFT online service for multiple sequence alignment (MSA). As a result of recent advances in sequencing technologies, huge numbers of biological sequences are available and...

Materias / palabras clave: Receptive field; Visual cortex; Citation; Computer science; Architecture; Cortex (anatomy); Binocular vision; Information retrieval; Psychology; Cognitive science; Neuroscience; World Wide Web

Materias / palabras clave: Situated; Perspective (graphical); Privilege (computing); Feminism; Sociology; Gender studies; Political science; Art; Visual arts; Computer science; Law; Artificial intelligence

Materias / palabras clave: Pascal (unit); Benchmark (surveying); Artificial intelligence; Computer science; Object detection; Cognitive neuroscience of visual object recognition; Machine learning; Visual inspection; Context (archaeology); Object (...

There are few phenomena in condensed matter physics that are defined only by the fundamental constants and do not depend on material parameters. Examples are the resistivity quantum, h/e2 (h is Planck's constant and e th...

Multiscale feature extraction from the visual environment in an active vision system Y.Machrouh 1, J.-S.Liénard 1, P.Tarroux 1, 2 Abstract. This paper presents a visual architecture able to identify salient regions in a...

We present Momentum Contrast (MoCo) for unsupervised visual representation learning. From a perspective on contrastive learning as dictionary look-up, we build a dynamic dictionary with a queue and a moving-averaged enco...

Existing deep convolutional neural networks (CNNs) require a fixed-size (e.g., 224 × 224) input image. This requirement is "artificial" and may reduce the recognition accuracy for the images or sub-images of an arbitrar...

Contents: Preface. Introduction. Part I: The Environment To Be Perceived.The Animal And The Environment. Medium, Substances, Surfaces. The Meaningful Environment. Part II: The Information For Visual Perception.The Relati...

The VideoToolbox is a free collection of two hundred C subroutines for Macintosh computers that calibrates and controls the computer-display interface to create accurately specified visual stimuli. High-level platform-in...